TopologyKernel.cc 47.6 KB
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/*===========================================================================*\
 *                                                                           *
 *                            OpenVolumeMesh                                 *
 *        Copyright (C) 2011 by Computer Graphics Group, RWTH Aachen         *
 *                        www.openvolumemesh.org                             *
 *                                                                           *
 *---------------------------------------------------------------------------*
 *  This file is part of OpenVolumeMesh.                                     *
 *                                                                           *
 *  OpenVolumeMesh is free software: you can redistribute it and/or modify   *
 *  it under the terms of the GNU Lesser General Public License as           *
 *  published by the Free Software Foundation, either version 3 of           *
 *  the License, or (at your option) any later version with the              *
 *  following exceptions:                                                    *
 *                                                                           *
 *  If other files instantiate templates or use macros                       *
 *  or inline functions from this file, or you compile this file and         *
 *  link it with other files to produce an executable, this file does        *
 *  not by itself cause the resulting executable to be covered by the        *
 *  GNU Lesser General Public License. This exception does not however       *
 *  invalidate any other reasons why the executable file might be            *
 *  covered by the GNU Lesser General Public License.                        *
 *                                                                           *
 *  OpenVolumeMesh is distributed in the hope that it will be useful,        *
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of           *
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the            *
 *  GNU Lesser General Public License for more details.                      *
 *                                                                           *
 *  You should have received a copy of the GNU LesserGeneral Public          *
 *  License along with OpenVolumeMesh.  If not,                              *
 *  see <http://www.gnu.org/licenses/>.                                      *
 *                                                                           *
\*===========================================================================*/

/*===========================================================================*\
 *                                                                           *
 *   $Revision$                                                         *
 *   $Date$                    *
 *   $LastChangedBy$                                                *
 *                                                                           *
\*===========================================================================*/

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#include <OpenVolumeMesh/System/FunctionalInclude.hh>
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#include <queue>

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#include "TopologyKernel.hh"

namespace OpenVolumeMesh {

// Initialize constants
const VertexHandle      TopologyKernel::InvalidVertexHandle   = VertexHandle(-1);
const EdgeHandle        TopologyKernel::InvalidEdgeHandle     = EdgeHandle(-1);
const HalfEdgeHandle    TopologyKernel::InvalidHalfEdgeHandle = HalfEdgeHandle(-1);
const FaceHandle        TopologyKernel::InvalidFaceHandle     = FaceHandle(-1);
const HalfFaceHandle    TopologyKernel::InvalidHalfFaceHandle = HalfFaceHandle(-1);
const CellHandle        TopologyKernel::InvalidCellHandle     = CellHandle(-1);

TopologyKernel::TopologyKernel() :
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    n_vertices_(0u),
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    v_bottom_up_(true),
    e_bottom_up_(true),
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    f_bottom_up_(true) {
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}

TopologyKernel::~TopologyKernel() {
}

//========================================================================================

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VertexHandle TopologyKernel::add_vertex() {

    ++n_vertices_;

    // Create item for vertex bottom-up adjacencies
    if(v_bottom_up_) {
        outgoing_hes_per_vertex_.resize(n_vertices_);
    }

    // Resize vertex props
    resize_vprops(n_vertices_);

    // Return 0-indexed handle
    return VertexHandle((int)(n_vertices_ - 1));
}

//========================================================================================

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/// Add edge
EdgeHandle TopologyKernel::add_edge(const VertexHandle& _fromVertex,
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                                    const VertexHandle& _toVertex,
                                    bool _allowDuplicates) {
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#ifndef NDEBUG
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    if((unsigned int)_fromVertex.idx() >= n_vertices() || (unsigned int)_toVertex.idx() >= n_vertices()) {
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        std::cerr << "Vertex handle is out of bounds!" << std::endl;
        return InvalidEdgeHandle;
    }
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#endif
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    // Test if edge does not exist, yet
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    if(!_allowDuplicates) {
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        if(v_bottom_up_) {

            assert(outgoing_hes_per_vertex_.size() > (unsigned int)_fromVertex.idx());
            std::vector<HalfEdgeHandle>& ohes = outgoing_hes_per_vertex_[_fromVertex.idx()];
            for(std::vector<HalfEdgeHandle>::const_iterator he_it = ohes.begin(),
                    he_end = ohes.end(); he_it != he_end; ++he_it) {
                if(halfedge(*he_it).to_vertex() == _toVertex) {
                    return edge_handle(*he_it);
                }
            }
        } else {
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            for(unsigned int i = 0; i < edges_.size(); ++i) {
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                if(edge(EdgeHandle(i)).from_vertex() == _fromVertex && edge(EdgeHandle(i)).to_vertex() == _toVertex) {
                    return EdgeHandle(i);
                } else if(edge(EdgeHandle(i)).from_vertex() == _toVertex && edge(EdgeHandle(i)).to_vertex() == _fromVertex) {
                    return EdgeHandle(i);
                }
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            }
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        }
    }

    // Create edge object
    OpenVolumeMeshEdge e(_fromVertex, _toVertex);

    // Store edge locally
    edges_.push_back(e);

    // Resize props
    resize_eprops(n_edges());

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    EdgeHandle eh((int)edges_.size()-1);
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    // Update vertex bottom-up adjacencies
    if(v_bottom_up_) {
        assert(outgoing_hes_per_vertex_.size() > (unsigned int)_fromVertex.idx());
        assert(outgoing_hes_per_vertex_.size() > (unsigned int)_toVertex.idx());
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        outgoing_hes_per_vertex_[_fromVertex.idx()].push_back(halfedge_handle(eh, 0));
        outgoing_hes_per_vertex_[_toVertex.idx()].push_back(halfedge_handle(eh, 1));
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    }

    // Create item for edge bottom-up adjacencies
    if(e_bottom_up_) {
        incident_hfs_per_he_.resize(n_halfedges());
    }

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    // Get handle of recently created edge
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    return eh;
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}

//========================================================================================

/// Add face via incident edges
FaceHandle TopologyKernel::add_face(const std::vector<HalfEdgeHandle>& _halfedges, bool _topologyCheck) {

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#ifndef NDEBUG
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    // Test if all edges are valid
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    for(std::vector<HalfEdgeHandle>::const_iterator it = _halfedges.begin(),
            end = _halfedges.end(); it != end; ++it) {
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        if((unsigned int)it->idx() >= edges_.size() * 2u) {
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            std::cerr << "Halfedge handle out of bounds!" << std::endl;
            return InvalidFaceHandle;
        }
    }
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#endif
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    // Perform topology check
    if(_topologyCheck) {

        /*
         * Test if halfedges are connected
         *
         * The test works as follows:
         * For every edge in the parameter vector
         * put all incident vertices into a
         * set of either "from"-vertices or "to"-vertices,
         * respectively.
         * If and only if all edges are connected,
         * then both sets are identical.
         */

        std::set<VertexHandle> fromVertices;
        std::set<VertexHandle> toVertices;

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        for(std::vector<HalfEdgeHandle>::const_iterator it = _halfedges.begin(),
            end = _halfedges.end(); it != end; ++it) {
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            fromVertices.insert(halfedge(*it).from_vertex());
            toVertices.insert(halfedge(*it).to_vertex());
        }

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        for(std::set<VertexHandle>::const_iterator v_it = fromVertices.begin(),
                v_end = fromVertices.end(); v_it != v_end; ++v_it) {
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            if(toVertices.count(*v_it) != 1) {
                std::cerr << "The specified halfedges are not connected!" << std::endl;
                return InvalidFaceHandle;
            }
        }

        // The halfedges are now guaranteed to be connected
    }

    // Create face
    OpenVolumeMeshFace face(_halfedges);

    faces_.push_back(face);

    // Get added face's handle
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    FaceHandle fh(faces_.size() - 1);
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    // Resize props
    resize_fprops(n_faces());

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    // Update edge bottom-up adjacencies
    if(e_bottom_up_) {

        for(std::vector<HalfEdgeHandle>::const_iterator it = _halfedges.begin(),
            end = _halfedges.end(); it != end; ++it) {
            assert(incident_hfs_per_he_.size() > (unsigned int)it->idx());
            assert(incident_hfs_per_he_.size() > (unsigned int)opposite_halfedge_handle(*it).idx());
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            incident_hfs_per_he_[it->idx()].push_back(halfface_handle(fh, 0));
            incident_hfs_per_he_[opposite_halfedge_handle(*it).idx()].push_back(halfface_handle(fh, 1));
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        }
    }

    // Create item for face bottom-up adjacencies
    if(f_bottom_up_) {
        incident_cell_per_hf_.resize(n_halffaces(), InvalidCellHandle);
    }

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    // Return handle of recently created face
    return fh;
}

//========================================================================================

/// Add face via incident vertices
/// Define the _vertices in counter-clockwise order (from the "outside")
FaceHandle TopologyKernel::add_face(const std::vector<VertexHandle>& _vertices) {

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#ifndef NDEBUG
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    // Test if all vertices exist
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    for(std::vector<VertexHandle>::const_iterator it = _vertices.begin(),
            end = _vertices.end(); it != end; ++it) {
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        if((unsigned int)it->idx() >= n_vertices()) {
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            std::cerr << "Vertex handle out of bounds!" << std::endl;
            return InvalidFaceHandle;
        }
    }
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#endif
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    // Add edge for each pair of vertices
    std::vector<HalfEdgeHandle> halfedges;
    std::vector<VertexHandle>::const_iterator it = _vertices.begin();
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    std::vector<VertexHandle>::const_iterator end = _vertices.end();
    for(; (it+1) != end; ++it) {
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        EdgeHandle e_idx = add_edge(*it, *(it+1));

        // Swap halfedge if edge already existed and
        // has been initially defined in reverse orientation
        int swap = 0;
        if(edge(e_idx).to_vertex() == *it) swap = 1;

        halfedges.push_back(halfedge_handle(e_idx, swap));
    }
    EdgeHandle e_idx = add_edge(*it, *_vertices.begin());
    int swap = 0;
    if(edge(e_idx).to_vertex() == *it) swap = 1;
    halfedges.push_back(halfedge_handle(e_idx, swap));

    // Add face
#ifndef NDEBUG
    return add_face(halfedges, true);
#else
    return add_face(halfedges, false);
#endif
}

//========================================================================================

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void TopologyKernel::reorder_incident_halffaces(const EdgeHandle& _eh) {

    /* Put halffaces in clockwise order via the
     * same cell property which now exists.
     * Note, this only works for manifold configurations though.
     * Proceed as follows: Pick one starting halfface. Assuming
     * that all halfface normals point into the incident cell,
     * we find the adjacent halfface within the incident cell
     * along the considered halfedge. We set the found halfface
     * to be the one to be processed next. If we reach an outside
     * region, we try to go back from the starting halfface in reverse
     * order. If the complex is properly connected (the pairwise
     * intersection of two adjacent 3-dimensional cells is always
     * a 2-dimensional entity, namely a facet), such an ordering
     * always exists and will be found. If not, a correct order
     * can not be given and, as a result, the related iterators
     * will address the related entities in an arbitrary fashion.
     */

    for(unsigned char s = 0; s <= 1; s++) {

        HalfEdgeHandle cur_he = halfedge_handle(_eh, s);
        std::vector<HalfFaceHandle> new_halffaces;
        HalfFaceHandle start_hf = InvalidHalfFaceHandle;
        HalfFaceHandle cur_hf = InvalidHalfFaceHandle;

        // Start with one incident halfface and go
        // into the first direction
        assert(incident_hfs_per_he_.size() > (unsigned int)cur_he.idx());

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        if(incident_hfs_per_he_[cur_he.idx()].size() != 0) {
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            // Get start halfface
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            cur_hf = *incident_hfs_per_he_[cur_he.idx()].begin();
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            start_hf = cur_hf;

            while(cur_hf != InvalidHalfFaceHandle) {

                // Add halfface
                new_halffaces.push_back(cur_hf);

                // Go to next halfface
                cur_hf = adjacent_halfface_in_cell(cur_hf, cur_he);

                if(cur_hf != InvalidHalfFaceHandle)
                    cur_hf = opposite_halfface_handle(cur_hf);

                // End when we're through
                if(cur_hf == start_hf) break;
            }

            // First direction has terminated
            // If new_halffaces has the same size as old (unordered)
            // vector of incident halffaces, we are done here
            // If not, try the other way round
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            if(new_halffaces.size() != incident_hfs_per_he_[cur_he.idx()].size()) {
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                // Get opposite of start halfface
                cur_hf = start_hf;

                 while(cur_hf != InvalidHalfFaceHandle) {

                     cur_hf = opposite_halfface_handle(cur_hf);
                     cur_hf = adjacent_halfface_in_cell(cur_hf, cur_he);

                     if(cur_hf == start_hf) break;

                     if(cur_hf != InvalidHalfFaceHandle)
                         new_halffaces.insert(new_halffaces.begin(), cur_hf);
                     else break;
                }
            }

            // Everything worked just fine, set the new ordered vector
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            if(new_halffaces.size() == incident_hfs_per_he_[cur_he.idx()].size()) {
                incident_hfs_per_he_[cur_he.idx()] = new_halffaces;
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            }
        }
    }
}

//========================================================================================

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/// Add cell via incident halffaces
CellHandle TopologyKernel::add_cell(const std::vector<HalfFaceHandle>& _halffaces, bool _topologyCheck) {

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#ifndef NDEBUG
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    // Test if halffaces have valid indices
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    for(std::vector<HalfFaceHandle>::const_iterator it = _halffaces.begin(),
            end = _halffaces.end(); it != end; ++it) {
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        if((unsigned int)it->idx() >= faces_.size() * 2u) {
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            std::cerr << "HalfFace handle is out of bounds!" << std::endl;
            return InvalidCellHandle;
        }
    }
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#endif
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    // Perform topology check
    if(_topologyCheck) {

        /*
         * Test if all halffaces are connected and form a two-manifold
         * => Cell is closed
         *
         * This test is simple: The number of involved half-edges has to be
         * exactly twice the number of involved edges.
         */

        std::set<HalfEdgeHandle> incidentHalfedges;
        std::set<EdgeHandle>     incidentEdges;

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        for(std::vector<HalfFaceHandle>::const_iterator it = _halffaces.begin(),
                end = _halffaces.end(); it != end; ++it) {
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            OpenVolumeMeshFace hface = halfface(*it);
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            for(std::vector<HalfEdgeHandle>::const_iterator he_it = hface.halfedges().begin(),
                    he_end = hface.halfedges().end(); he_it != he_end; ++he_it) {
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                incidentHalfedges.insert(*he_it);
                incidentEdges.insert(edge_handle(*he_it));
            }
        }

        if(incidentHalfedges.size() != (incidentEdges.size() * 2u)) {
            std::cerr << "The specified halffaces are not connected!" << std::endl;
            return InvalidCellHandle;
        }

        // The halffaces are now guaranteed to form a two-manifold
    }

    // Create new cell
    OpenVolumeMeshCell cell(_halffaces);

    cells_.push_back(cell);

    // Resize props
    resize_cprops(n_cells());

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    CellHandle ch((int)cells_.size()-1);
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    // Update face bottom-up adjacencies
    if(f_bottom_up_) {

        std::set<EdgeHandle> cell_edges;
        for(std::vector<HalfFaceHandle>::const_iterator it = _halffaces.begin(),
                end = _halffaces.end(); it != end; ++it) {
            assert(incident_cell_per_hf_.size() > (unsigned int)it->idx());
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            if(_topologyCheck) {
                assert(incident_cell_per_hf_[it->idx()] == InvalidCellHandle);
                if(incident_cell_per_hf_[it->idx()] != InvalidCellHandle) {
                    std::cerr << "Warning: One of the specified half-face is already incident to another cell!" << std::endl;
                }
            }

            // Overwrite incident cell for current half-face
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            incident_cell_per_hf_[it->idx()] = ch;
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            // Collect all edges of cell
            const std::vector<HalfEdgeHandle> hes = halfface(*it).halfedges();
            for(std::vector<HalfEdgeHandle>::const_iterator he_it = hes.begin(),
                    he_end = hes.end(); he_it != he_end; ++he_it) {
                cell_edges.insert(edge_handle(*he_it));
            }
        }

        if(e_bottom_up_) {

            // Try to reorder all half-faces w.r.t.
            // their incident half-edges such that all
            // half-faces are in cyclic order around
            // a half-edge
            for(std::set<EdgeHandle>::const_iterator e_it = cell_edges.begin(),
                    e_end = cell_edges.end(); e_it != e_end; ++e_it) {
                reorder_incident_halffaces(*e_it);
            }
        }
    }

    return ch;
}

//========================================================================================

/**
 * \brief Delete vertex from mesh
 *
 * After performing this operation, all vertices
 * following vertex _h in the array will be accessible
 * through their old handle decreased by one.
 * This function directly fixes the vertex links
 * in all edges. These steps are performed:
 *
 * 1) Search all incident half-edges HE_v +
 *    Decrease all vertex handles in incident edges
 *    with index > v by 1
 * 2) Delete entry in BU: V -> HF
 * 3) Delete vertex itself (not necessary here since
 *    a vertex is only represented by a number)
 * 4) Delete property entry
 * 5) Delete incident edges
 *
 * @param _h A vertex handle
 */
VertexIter TopologyKernel::delete_vertex(const VertexHandle& _h) {

    assert(_h.idx() < (int)n_vertices());

    // 1)
    std::priority_queue<EdgeHandle> incident_edges;
    if(v_bottom_up_) {

        // Speed-up, because we know the incident edges
        // Get incident edges
        assert(outgoing_hes_per_vertex_.size() > (unsigned int)_h.idx());
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        const std::vector<HalfEdgeHandle>& inc_hes = outgoing_hes_per_vertex_[_h.idx()];
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        for(std::vector<HalfEdgeHandle>::const_iterator he_it = inc_hes.begin(),
                he_end = inc_hes.end(); he_it != he_end; ++he_it) {
            incident_edges.push(edge_handle(*he_it));
        }
        // Decrease all vertex handles that are greater than _h in all edge definitions
        for(std::vector<std::vector<HalfEdgeHandle> >::iterator he_it = (outgoing_hes_per_vertex_.begin() + _h.idx() + 1),
                he_end = outgoing_hes_per_vertex_.end(); he_it != he_end; ++he_it) {
            for(std::vector<HalfEdgeHandle>::const_iterator it = he_it->begin(),
                    end = he_it->end(); it != end; ++it) {

                if(it->idx() % 2 == 0) {
                    VertexHandle vh = edge(edge_handle(*it)).from_vertex();
                    if(vh.is_valid())
                        edge(edge_handle(*it)).set_from_vertex(VertexHandle(vh.idx() - 1));
                } else {
                    VertexHandle vh = edge(edge_handle(*it)).to_vertex();
                    if(vh.is_valid())
                        edge(edge_handle(*it)).set_to_vertex(VertexHandle(vh.idx() - 1));
                }
            }
        }
    } else {

        // Iterate over all edges
        for(EdgeIter e_it = edges_begin(), e_end = edges_end();
                e_it != e_end; ++e_it) {

            // Get incident edges
            if(edge(*e_it).from_vertex() == _h ||
                    edge(*e_it).to_vertex() == _h) {
                incident_edges.push(*e_it);
                continue;
            }

            // Decrease all vertex handles in edge definitions that are greater than _h
            if(edge(*e_it).from_vertex() > _h) {
                edge(*e_it).set_from_vertex(VertexHandle(edge(*e_it).from_vertex().idx() - 1));
            }
            if(edge(*e_it).to_vertex() > _h) {
                edge(*e_it).set_to_vertex(VertexHandle(edge(*e_it).to_vertex().idx() - 1));
            }
        }
    }

    // 2)
    if(v_bottom_up_) {
        assert(outgoing_hes_per_vertex_.size() > (unsigned int)_h.idx());
        outgoing_hes_per_vertex_.erase(outgoing_hes_per_vertex_.begin() + _h.idx());
    }

    // 3)
    --n_vertices_;

    // 4)
    vertex_deleted(_h);

    // 5)
    while(!incident_edges.empty()) {
        delete_edge(incident_edges.top());
        incident_edges.pop();
    }

    // Iterator to next element in vertex list
    return (vertices_begin() + _h.idx());
}

//========================================================================================

/**
 * \brief Delete edge from mesh
 *
 * After performing this operation, all edges
 * following edge _h in the array will be accessible
 * through their old handle decreased by one.
 * This function directly fixes the edge links
 * in all faces. These steps are performed:
 *
 * 1) Delete links in BU: V -> HE
 * 2) Search all incident faces +
 *    decrease all half-edge handles > he
 *    in all incident faces
 * 3) Delete item in BU: HE -> HF
 * 4) Decrease all entries > he in BU: V -> HE
 * 5) Delete edge from storage array
 * 6) Delete property item
 * 7) Delete incident faces
 *
 * @param _h An edge handle
 */
EdgeIter TopologyKernel::delete_edge(const EdgeHandle& _h) {

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    assert(_h.idx() < (int)edges_.size());
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    // 1)
    if(v_bottom_up_) {

        VertexHandle v0 = edge(_h).from_vertex();
        VertexHandle v1 = edge(_h).to_vertex();
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        assert(outgoing_hes_per_vertex_.size() > (unsigned int)std::max(v0.idx(), v1.idx()));
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        outgoing_hes_per_vertex_[v0.idx()].erase(
                std::remove(outgoing_hes_per_vertex_[v0.idx()].begin(),
                            outgoing_hes_per_vertex_[v0.idx()].end(),
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                            halfedge_handle(_h, 0)),
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                            outgoing_hes_per_vertex_[v0.idx()].end());
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        outgoing_hes_per_vertex_[v1.idx()].erase(
                std::remove(outgoing_hes_per_vertex_[v1.idx()].begin(),
                            outgoing_hes_per_vertex_[v1.idx()].end(),
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                            halfedge_handle(_h, 1)),
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                            outgoing_hes_per_vertex_[v1.idx()].end());
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    }

    // 2)
    std::priority_queue<FaceHandle> incident_faces;
    if(e_bottom_up_) {

        // Speed-up, because we already know all incident faces
        // Get incident faces
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        assert(incident_hfs_per_he_.size() > (unsigned int)halfedge_handle(_h, 0).idx());
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        const std::vector<HalfFaceHandle>& inc_hfs = incident_hfs_per_he_[halfedge_handle(_h, 0).idx()];
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        for(std::vector<HalfFaceHandle>::const_iterator hf_it = inc_hfs.begin(),
                hf_end = inc_hfs.end(); hf_it != hf_end; ++hf_it) {
            incident_faces.push(face_handle(*hf_it));
        }

        // Decrease all half-edge handles > he in face definitions
        // Get all faces that need updates
        std::set<FaceHandle> update_faces;
        for(std::vector<std::vector<HalfFaceHandle> >::const_iterator iit =
                (incident_hfs_per_he_.begin() + halfedge_handle(_h, 1).idx() + 1),
                iit_end = incident_hfs_per_he_.end(); iit != iit_end; ++iit) {
            for(std::vector<HalfFaceHandle>::const_iterator it = iit->begin(),
                    end = iit->end(); it != end; ++it) {
                update_faces.insert(face_handle(*it));
            }
        }
        // Update respective handles
        HEHandleCorrection cor(halfedge_handle(_h, 1));
        for(std::set<FaceHandle>::iterator f_it = update_faces.begin(),
                f_end = update_faces.end(); f_it != f_end; ++f_it) {

            std::vector<HalfEdgeHandle> hes = face(*f_it).halfedges();

            // Delete current half-edge from face's half-edge list
            hes.erase(std::remove(hes.begin(), hes.end(), halfedge_handle(_h, 0)), hes.end());
            hes.erase(std::remove(hes.begin(), hes.end(), halfedge_handle(_h, 1)), hes.end());

            std::for_each(hes.begin(), hes.end(),
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                          fun::bind(&HEHandleCorrection::correctValue, &cor, fun::placeholders::_1));
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            face(*f_it).set_halfedges(hes);
        }
    } else {

        // Iterate over all faces
        for(FaceIter f_it = faces_begin(), f_end = faces_end();
                f_it != f_end; ++f_it) {

            std::vector<HalfEdgeHandle> hes = face(*f_it).halfedges();
            if(std::find(hes.begin(), hes.end(), halfedge_handle(_h, 0)) != hes.end() ||
                    std::find(hes.begin(), hes.end(), halfedge_handle(_h, 1)) != hes.end()) {
                // Face is incident to current edge
                incident_faces.push(*f_it);
                continue;
            }

            // Delete current half-edge from face's half-edge list
            hes.erase(std::remove(hes.begin(), hes.end(), halfedge_handle(_h, 0)), hes.end());
            hes.erase(std::remove(hes.begin(), hes.end(), halfedge_handle(_h, 1)), hes.end());

            // Decrease all half-edge handles greater than _h in face
            HEHandleCorrection cor(halfedge_handle(_h, 1));
            std::for_each(hes.begin(), hes.end(),
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                          fun::bind(&HEHandleCorrection::correctValue, &cor, fun::placeholders::_1));
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            face(*f_it).set_halfedges(hes);
        }
    }

    // 3)
    if(e_bottom_up_) {
        assert(incident_hfs_per_he_.size() > (unsigned int)halfedge_handle(_h, 1).idx());
        incident_hfs_per_he_.erase(incident_hfs_per_he_.begin() + halfedge_handle(_h, 1).idx());
        incident_hfs_per_he_.erase(incident_hfs_per_he_.begin() + halfedge_handle(_h, 0).idx());
    }

    // 4)
    if(v_bottom_up_) {
        HEHandleCorrection cor(halfedge_handle(_h, 1));
        std::for_each(outgoing_hes_per_vertex_.begin(),
                      outgoing_hes_per_vertex_.end(),
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                      fun::bind(&HEHandleCorrection::correctVecValue, &cor, fun::placeholders::_1));
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    }

    // 5)
    edges_.erase(edges_.begin() + _h.idx());

    // 6)
    edge_deleted(_h);

    // 7)
    while(!incident_faces.empty()) {
        delete_face(incident_faces.top());
        incident_faces.pop();
    }

    // Return iterator to next element in list
    return (edges_begin() + _h.idx());
}

//========================================================================================

/**
 * \brief Delete face from mesh
 *
 * After performing this operation, all faces
 * following face _h in the array will be accessible
 * through their old handle decreased by one.
 * This function directly fixes the face links
 * in all cells. These steps are performed:
 *
 * 1) Delete links in BU: HE -> HF
 * 2) Search all incident cells +
 *    decrease all half-face handles > hf
 *    in all incident cells
 * 3) Delete item in BU: HF -> C
 * 4) Decrease all entries > hf in BU: HE -> HF
 * 5) Delete face from storage array
 * 6) Delete property item
 * 7) Delete incident cells
 *
 * @param _h A face handle
 */
FaceIter TopologyKernel::delete_face(const FaceHandle& _h) {

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    assert(_h.idx() < (int)faces_.size());
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    // 1)
    if(e_bottom_up_) {

        const std::vector<HalfEdgeHandle>& hes = face(_h).halfedges();
        for(std::vector<HalfEdgeHandle>::const_iterator he_it = hes.begin(),
                he_end = hes.end(); he_it != he_end; ++he_it) {

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            assert(incident_hfs_per_he_.size() > (unsigned int)std::max(he_it->idx(), opposite_halfedge_handle(*he_it).idx()));
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            incident_hfs_per_he_[he_it->idx()].erase(
                    std::remove(incident_hfs_per_he_[he_it->idx()].begin(),
                                incident_hfs_per_he_[he_it->idx()].end(),
                                halfface_handle(_h, 0)), incident_hfs_per_he_[he_it->idx()].end());
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            incident_hfs_per_he_[opposite_halfedge_handle(*he_it).idx()].erase(
                    std::remove(incident_hfs_per_he_[opposite_halfedge_handle(*he_it).idx()].begin(),
                                incident_hfs_per_he_[opposite_halfedge_handle(*he_it).idx()].end(),
                                halfface_handle(_h, 1)), incident_hfs_per_he_[opposite_halfedge_handle(*he_it).idx()].end());
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        }
    }

    // 2)
    std::priority_queue<CellHandle> incident_cells;
    if(f_bottom_up_) {

        // Speed-up, since we already know all incident cells
        // Get incident cells for deletion
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        assert(incident_cell_per_hf_.size() > (unsigned int)halfface_handle(_h, 1).idx());
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        if(incident_cell_per_hf_[halfface_handle(_h, 0).idx()].is_valid()) {
            incident_cells.push(incident_cell_per_hf_[halfface_handle(_h, 0).idx()]);
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        }
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        if(incident_cell_per_hf_[halfface_handle(_h, 1).idx()].is_valid()) {
            incident_cells.push(incident_cell_per_hf_[halfface_handle(_h, 1).idx()]);
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        }

        // Decrease all half-face handles > _h in all cells
        std::set<CellHandle> update_cells;
        for(std::vector<CellHandle>::const_iterator c_it = (incident_cell_per_hf_.begin() + halfface_handle(_h, 1).idx() + 1),
                c_end = incident_cell_per_hf_.end(); c_it != c_end; ++c_it) {
            if(!c_it->is_valid()) continue;
            update_cells.insert(*c_it);
        }
        for(std::set<CellHandle>::const_iterator c_it = update_cells.begin(),
                c_end = update_cells.end(); c_it != c_end; ++c_it) {

            std::vector<HalfFaceHandle> hfs = cell(*c_it).halffaces();

            // Delete current half-faces from cell's half-face list
            hfs.erase(std::remove(hfs.begin(), hfs.end(), halfface_handle(_h, 0)), hfs.end());
            hfs.erase(std::remove(hfs.begin(), hfs.end(), halfface_handle(_h, 1)), hfs.end());

            HFHandleCorrection cor(halfface_handle(_h, 1));
            std::for_each(hfs.begin(), hfs.end(),
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                          fun::bind(&HFHandleCorrection::correctValue, &cor, fun::placeholders::_1));
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            cell(*c_it).set_halffaces(hfs);
        }

    } else {

        // Iterate over all cells
        for(CellIter c_it = cells_begin(), c_end = cells_end(); c_it != c_end; ++c_it) {

            std::vector<HalfFaceHandle> hfs = cell(*c_it).halffaces();
            if(std::find(hfs.begin(), hfs.end(), halfface_handle(_h, 0)) != hfs.end() ||
                    std::find(hfs.begin(), hfs.end(), halfface_handle(_h, 1)) != hfs.end()) {
                // Delete cell
                incident_cells.push(*c_it);
                continue;
            }
            // Delete current half-faces from cell's half-face list
            hfs.erase(std::remove(hfs.begin(), hfs.end(), halfface_handle(_h, 0)), hfs.end());
            hfs.erase(std::remove(hfs.begin(), hfs.end(), halfface_handle(_h, 1)), hfs.end());

            HFHandleCorrection cor(halfface_handle(_h, 1));
            std::for_each(hfs.begin(), hfs.end(),
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                          fun::bind(&HFHandleCorrection::correctValue, &cor, fun::placeholders::_1));
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            cell(*c_it).set_halffaces(hfs);
        }
    }

    // 3)
    if(f_bottom_up_) {
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        assert(incident_cell_per_hf_.size() > (unsigned int)halfface_handle(_h, 1).idx());
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        incident_cell_per_hf_.erase(incident_cell_per_hf_.begin() + halfface_handle(_h, 1).idx());
        incident_cell_per_hf_.erase(incident_cell_per_hf_.begin() + halfface_handle(_h, 0).idx());
    }

    // 4)
    if(e_bottom_up_) {
        HFHandleCorrection cor(halfface_handle(_h, 1));
        std::for_each(incident_hfs_per_he_.begin(),
                      incident_hfs_per_he_.end(),
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                      fun::bind(&HFHandleCorrection::correctVecValue, &cor, fun::placeholders::_1));
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    }

    // 5)
    faces_.erase(faces_.begin() + _h.idx());

    // 6)
    face_deleted(_h);

    // 7)
    while(!incident_cells.empty()) {
        delete_cell(incident_cells.top());
        incident_cells.pop();
    }

    // Return iterator to next element in list
    return (faces_begin() + _h.idx());
}

//========================================================================================

/**
 * \brief Delete cell from mesh
 *
 * After performing this operation, all cells
 * following cell _h in the array will be accessible
 * through their old handle decreased by one.
 * These steps are performed:
 *
 * 1) Delete links in BU: HF -> C
 * 2) Decrease all entries > c in BU: HF -> C
 * 3) Delete cell from storage array
 * 4) Delete property item
 *
 * @param _h A cell handle
 */
CellIter TopologyKernel::delete_cell(const CellHandle& _h) {

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    assert(_h.idx() < (int)cells_.size());
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    // 1)
    if(f_bottom_up_) {
        const std::vector<HalfFaceHandle>& hfs = cell(_h).halffaces();
        for(std::vector<HalfFaceHandle>::const_iterator hf_it = hfs.begin(),
                hf_end = hfs.end(); hf_it != hf_end; ++hf_it) {
            assert(incident_cell_per_hf_.size() > (unsigned int)hf_it->idx());

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            incident_cell_per_hf_[hf_it->idx()] = InvalidCellHandle;
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        }
    }

    // 2)
    if(f_bottom_up_) {
        CHandleCorrection cor(_h);
        std::for_each(incident_cell_per_hf_.begin(),
                      incident_cell_per_hf_.end(),
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                      fun::bind(&CHandleCorrection::correctValue, &cor, fun::placeholders::_1));
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    }

    // 3)
    cells_.erase(cells_.begin() + _h.idx());

    // 4)
    cell_deleted(_h);

    return (cells_begin() + _h.idx());
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}

//========================================================================================

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CellIter TopologyKernel::delete_cell_range(const CellIter& _first, const CellIter& _last) {

    assert(_first >= cells_begin());
    assert(_last < cells_end());

    std::vector<Cell>::iterator it = cells_.erase(cells_.begin() + _first->idx(), cells_.begin() + _last->idx());

    // Re-compute face bottom-up adjacencies if necessary
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Mike Kremer committed
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    if(f_bottom_up_) {
        f_bottom_up_ = false;
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        enable_face_bottom_up_adjacencies(true);
    }

    return CellIter(this, CellHandle(it - cells_.begin()));
}

//========================================================================================

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/// Get edge with handle _edgeHandle
const OpenVolumeMeshEdge& TopologyKernel::edge(const EdgeHandle& _edgeHandle) const {

    // Test if edge is valid
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    assert((unsigned int)_edgeHandle.idx() < edges_.size());
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    assert(_edgeHandle.idx() >= 0);
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    return edges_[_edgeHandle.idx()];
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}

//========================================================================================

/// Get face with handle _faceHandle
const OpenVolumeMeshFace& TopologyKernel::face(const FaceHandle& _faceHandle) const {

    // Test if face is valid
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    assert((unsigned int)_faceHandle.idx() < faces_.size());
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    assert(_faceHandle.idx() >= 0);
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    return faces_[_faceHandle.idx()];
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}

//========================================================================================

/// Get cell with handle _cellHandle
const OpenVolumeMeshCell& TopologyKernel::cell(const CellHandle& _cellHandle) const {

    // Test if cell is valid
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    assert((unsigned int)_cellHandle.idx() < cells_.size());
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    assert(_cellHandle.idx() >= 0);
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    return cells_[_cellHandle.idx()];
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}

//========================================================================================

/// Get edge with handle _edgeHandle
OpenVolumeMeshEdge& TopologyKernel::edge(const EdgeHandle& _edgeHandle) {

    // Test if edge is valid
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    assert((unsigned int)_edgeHandle.idx() < edges_.size());
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    assert(_edgeHandle.idx() >= 0);
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    return edges_[_edgeHandle.idx()];
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}

//========================================================================================

/// Get face with handle _faceHandle
OpenVolumeMeshFace& TopologyKernel::face(const FaceHandle& _faceHandle) {

    // Test if face is valid
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    assert((unsigned int)_faceHandle.idx() < faces_.size());
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    assert(_faceHandle.idx() >= 0);
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    return faces_[_faceHandle.idx()];
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}

//========================================================================================

/// Get cell with handle _cellHandle
OpenVolumeMeshCell& TopologyKernel::cell(const CellHandle& _cellHandle) {

    // Test if cell is valid
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    assert((unsigned int)_cellHandle.idx() < cells_.size());
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    assert(_cellHandle.idx() >= 0);
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    return cells_[_cellHandle.idx()];
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}

//========================================================================================

/// Get edge that corresponds to halfedge with handle _halfEdgeHandle
const OpenVolumeMeshEdge TopologyKernel::halfedge(const HalfEdgeHandle& _halfEdgeHandle) const {

    // Is handle in range?
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    assert((unsigned int)_halfEdgeHandle.idx() < (edges_.size() * 2));
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    assert(_halfEdgeHandle.idx() >= 0);
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    // In case the handle is even, just return the corresponding edge
    /// Otherwise return the opposite halfedge via opposite()
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    if(_halfEdgeHandle.idx() % 2 == 0)
        return edges_[(int)(_halfEdgeHandle.idx() / 2)];
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    else
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        return opposite_halfedge(edges_[(int)(_halfEdgeHandle.idx() / 2)]);
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}

//========================================================================================

/// Get face that corresponds to halfface with handle _halfFaceHandle
const OpenVolumeMeshFace TopologyKernel::halfface(const HalfFaceHandle& _halfFaceHandle) const {

    // Is handle in range?
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    assert((unsigned int)_halfFaceHandle.idx() < (faces_.size() * 2));
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    assert(_halfFaceHandle.idx() >= 0);
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    // In case the handle is not even, just return the corresponding face
    // Otherwise return the opposite halfface via opposite()
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    if(_halfFaceHandle.idx() % 2 == 0)
        return faces_[(int)(_halfFaceHandle.idx() / 2)];
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    else
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        return opposite_halfface(faces_[(int)(_halfFaceHandle.idx() / 2)]);
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}

//========================================================================================

/// Get opposite halfedge that corresponds to halfedge with handle _halfEdgeHandle
const OpenVolumeMeshEdge TopologyKernel::opposite_halfedge(const HalfEdgeHandle& _halfEdgeHandle) const {

    // Is handle in range?
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    assert(_halfEdgeHandle.idx() >= 0);
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    assert((unsigned int)_halfEdgeHandle.idx() < (edges_.size() * 2));
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    // In case the handle is not even, just return the corresponding edge
    // Otherwise return the opposite halfedge via opposite()
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    if(_halfEdgeHandle.idx() % 2 != 0)
        return edges_[(int)(_halfEdgeHandle.idx() / 2)];
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    else
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        return opposite_halfedge(edges_[(int)(_halfEdgeHandle.idx() / 2)]);
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}

//========================================================================================

/// Get opposite halfface that corresponds to halfface with handle _halfFaceHandle
const OpenVolumeMeshFace TopologyKernel::opposite_halfface(const HalfFaceHandle& _halfFaceHandle) const {

    // Is handle in range?
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    assert(_halfFaceHandle.idx() >= 0);
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    assert((unsigned int)_halfFaceHandle.idx() < (faces_.size() * 2));
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    // In case the handle is not even, just return the corresponding face
    // Otherwise return the opposite via the first face's opposite() function
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    if(_halfFaceHandle.idx() % 2 != 0)
        return faces_[(int)(_halfFaceHandle.idx() / 2)];
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    else
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        return opposite_halfface(faces_[(int)(_halfFaceHandle.idx() / 2)]);
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}

//========================================================================================

const HalfEdgeHandle TopologyKernel::halfedge(const VertexHandle& _vh1, const VertexHandle& _vh2) const {

    assert(_vh1.idx() < (int)n_vertices());
    assert(_vh2.idx() < (int)n_vertices());

    for(VertexOHalfEdgeIter voh_it = voh_iter(_vh1); voh_it.valid(); ++voh_it) {
        if(halfedge(*voh_it).to_vertex() == _vh2) {
            return *voh_it;
        }
    }

    return InvalidHalfEdgeHandle;
}

//========================================================================================

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const HalfFaceHandle TopologyKernel::halfface(const std::vector<VertexHandle>& _vs) const {

    assert(_vs.size() > 2);

    VertexHandle v0 = _vs[0], v1 = _vs[1], v2 = _vs[2];

    assert(v0.is_valid() && v1.is_valid() && v2.is_valid());

    HalfEdgeHandle he0 = halfedge(v0, v1);
    if(!he0.is_valid()) return InvalidHalfFaceHandle;
    HalfEdgeHandle he1 = halfedge(v1, v2);
    if(!he1.is_valid()) return InvalidHalfFaceHandle;

    std::vector<HalfEdgeHandle> hes;
    hes.push_back(he0);
    hes.push_back(he1);

    return halfface(hes);
}

//========================================================================================

const HalfFaceHandle TopologyKernel::halfface(const std::vector<HalfEdgeHandle>& _hes) const {

    assert(_hes.size() >= 2);

    HalfEdgeHandle he0 = _hes[0], he1 = _hes[1];

    assert(he0.is_valid() && he1.is_valid());

    for(HalfEdgeHalfFaceIter hehf_it = hehf_iter(he0); hehf_it.valid(); ++hehf_it) {

        std::vector<HalfEdgeHandle> hes = halfface(*hehf_it).halfedges();
        if(std::find(hes.begin(), hes.end(), he1) != hes.end()) {
            return *hehf_it;
        }
    }

    return InvalidHalfFaceHandle;
}

//========================================================================================

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const HalfEdgeHandle TopologyKernel::next_halfedge_in_halfface(const HalfEdgeHandle& _heh, const HalfFaceHandle& _hfh) const {

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    assert((unsigned int)_hfh.idx() < faces_.size() * 2u);
    assert((unsigned int)_heh.idx() < edges_.size() * 2u);
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    std::vector<HalfEdgeHandle> hes = halfface(_hfh).halfedges();

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    for(std::vector<HalfEdgeHandle>::const_iterator it = hes.begin();
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            it != hes.end(); ++it) {
        if(*it == _heh) {
            if((it + 1) != hes.end()) return *(it + 1);
            else return *hes.begin();
        }
    }

    return InvalidHalfEdgeHandle;
}

//========================================================================================

const HalfEdgeHandle TopologyKernel::prev_halfedge_in_halfface(const HalfEdgeHandle& _heh, const HalfFaceHandle& _hfh) const {

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    assert((unsigned int)_hfh.idx() < faces_.size() * 2u);
    assert((unsigned int)_heh.idx() < edges_.size() * 2u);
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    std::vector<HalfEdgeHandle> hes = halfface(_hfh).halfedges();

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    for(std::vector<HalfEdgeHandle>::const_iterator it = hes.begin();
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            it != hes.end(); ++it) {
        if(*it == _heh) {
            if(it != hes.begin()) return *(it - 1);
            else return *(hes.end() - 1);
        }
    }

    return InvalidHalfEdgeHandle;
}

//========================================================================================

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HalfFaceHandle
TopologyKernel::adjacent_halfface_in_cell(const HalfFaceHandle& _halfFaceHandle, const HalfEdgeHandle& _halfEdgeHandle) const {
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#ifndef NDEBUG
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    if((unsigned int)_halfFaceHandle.idx() >= incident_cell_per_hf_.size() || _halfFaceHandle.idx() < 0) {
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        return InvalidHalfFaceHandle;
    }
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#endif
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    if(!has_face_bottom_up_adjacencies()) {
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        std::cerr << "Error: Function adjacent_halfface_in_cell() needs face bottom-up adjacencies!" << std::endl;
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        return InvalidHalfFaceHandle;
    }
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    if(incident_cell_per_hf_[_halfFaceHandle.idx()] == InvalidCellHandle) {
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        // Specified halfface is on the outside of the complex
        return InvalidHalfFaceHandle;
    }
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    OpenVolumeMeshCell c = cell(incident_cell_per_hf_[_halfFaceHandle.idx()]);
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    // Make sure that _halfFaceHandle is incident to _halfEdgeHandle
    bool skipped = false;
    bool found = false;
    HalfFaceHandle idx = InvalidHalfFaceHandle;
    for(std::vector<HalfFaceHandle>::const_iterator hf_it = c.halffaces().begin();
            hf_it != c.halffaces().end(); ++hf_it) {
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        if(*hf_it == _halfFaceHandle) {
            skipped = true;
            continue;
        }
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        OpenVolumeMeshFace hf = halfface(*hf_it);
        for(std::vector<HalfEdgeHandle>::const_iterator he_it = hf.halfedges().begin();
            he_it != hf.halfedges().end(); ++he_it) {
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            if(edge_handle(*he_it) == edge_handle(_halfEdgeHandle)) {
                found = true;
                idx = *hf_it;
            }
            if(skipped && found) break;
        }
        if(skipped && found) break;
    }
    return ((skipped && found) ? idx : InvalidHalfFaceHandle);
}
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//========================================================================================
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CellHandle TopologyKernel::incident_cell(const HalfFaceHandle& _halfFaceHandle) const {
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    if(!has_face_bottom_up_adjacencies()) {
        return InvalidCellHandle;
    }
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    if((unsigned int)_halfFaceHandle.idx() >= incident_cell_per_hf_.size() || _halfFaceHandle.idx() < 0) {
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        return InvalidCellHandle;
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    }
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    return incident_cell_per_hf_[_halfFaceHandle.idx()];
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}

//========================================================================================

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void TopologyKernel::compute_vertex_bottom_up_adjacencies() {
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    // Clear adjacencies
    outgoing_hes_per_vertex_.clear();
    outgoing_hes_per_vertex_.resize(n_vertices());

    // Store outgoing halfedges per vertex
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    unsigned int n_edges = edges_.size();
    for(unsigned int i = 0; i < n_edges; ++i) {
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        VertexHandle from = edges_[i].from_vertex();
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        if((unsigned int)from.idx() >= outgoing_hes_per_vertex_.size()) {
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            std::cerr << "update_adjacencies(): Vertex handle is out of bounds!" << std::endl;
            return;
        }
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        outgoing_hes_per_vertex_[from.idx()].push_back(halfedge_handle(EdgeHandle(i), 0));
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        VertexHandle to = edges_[i].to_vertex();
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        if((unsigned int)to.idx() >= outgoing_hes_per_vertex_.size()) {
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            std::cerr << "update_adjacencies(): Vertex handle is out of bounds!" << std::endl;
            return;
        }
        // Store opposite halfedge handle
1240
        outgoing_hes_per_vertex_[to.idx()].push_back(halfedge_handle(EdgeHandle(i), 1));
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    }
}

//========================================================================================

1246
void TopologyKernel::compute_edge_bottom_up_adjacencies() {
1247 1248 1249

    // Clear
    incident_hfs_per_he_.clear();
1250
    incident_hfs_per_he_.resize(edges_.size() * 2u);
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    // Store incident halffaces per halfedge
1253
    unsigned int n_faces = faces_.size();
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    for(unsigned int i = 0; i < n_faces; ++i) {

        std::vector<HalfEdgeHandle> halfedges = faces_[i].halfedges();

        // Go over all halfedges
        for(std::vector<HalfEdgeHandle>::const_iterator he_it = halfedges.begin();
                he_it != halfedges.end(); ++he_it) {

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            incident_hfs_per_he_[he_it->idx()].push_back(halfface_handle(FaceHandle(i), 0));
            incident_hfs_per_he_[opposite_halfedge_handle(*he_it).idx()].push_back(
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                    halfface_handle(FaceHandle(i), 1));
        }
    }
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}

//========================================================================================

1271
void TopologyKernel::compute_face_bottom_up_adjacencies() {
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    // Clear
    incident_cell_per_hf_.clear();
1275
    incident_cell_per_hf_.resize(faces_.size() * 2u, InvalidCellHandle);
1276